title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Excitadoras_M {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/MA_HC_Excitadoras_M.RData")
```ENSG00000100154
Statistics of ENSG00000100154 meta-analisys
kable(sig.genes.df['ENSG00000100154',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000100154 | TTC28 | -1.59876 | -1.194597 | -0.7904335 | 0 | 0.5175481 | 0.7719974 | 0.2062094 | 0 | 0 | 1 | 4.7e-06 | 4.7e-05 | 5.329763 | 3 | 3 | non | 0.8812857 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000100154_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000100154_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000100154_INFLUENCE.png")
ENSG00000100285
Statistics of ENSG00000100285 meta-analisys
kable(sig.genes.df['ENSG00000100285',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000100285 | NEFH | 0.1048649 | 0.1636743 | 0.2224838 | 0 | 0.0920434 | 0.7615953 | 0.0300054 | 0 | 0 | 1 | 3.15e-05 | 0.0003167 | 4.501091 | 2 | 2 | Study43 | 0.5023568 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000100285_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000100285_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000100285_INFLUENCE.png")
ENSG00000104722
Statistics of ENSG00000104722 meta-analisys
kable(sig.genes.df['ENSG00000104722',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000104722 | NEFM | 0.7280224 | 0.9152204 | 1.102418 | 0 | 0.1030878 | 0.7481552 | 0.0955109 | 0 | 0 | 1 | 0 | 0 | 17.60248 | 2 | 2 | Study43 | 0.5036269 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000104722_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000104722_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000104722_INFLUENCE.png")
ENSG00000106772
Statistics of ENSG00000106772 meta-analisys
kable(sig.genes.df['ENSG00000106772',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000106772 | PRUNE2 | 0.4473869 | 0.6759801 | 0.9045733 | 0 | 0.9713361 | 0.615286 | 0.1166313 | 0 | 0 | 1 | 4.7e-06 | 4.7e-05 | 5.329763 | 3 | 2 | non | 0.8777161 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000106772_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000106772_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000106772_INFLUENCE.png")
ENSG00000120254
Statistics of ENSG00000120254 meta-analisys
kable(sig.genes.df['ENSG00000120254',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000120254 | MTHFD1L | -0.8184016 | -0.6254834 | -0.4325652 | 0 | 0.5368502 | 0.7645827 | 0.0984295 | 0 | 0 | 1 | 2e-07 | 2.5e-06 | 6.611832 | 3 | 3 | GSE163577 | 0.5586219 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000120254_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000120254_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000120254_INFLUENCE.png")
ENSG00000128739
Statistics of ENSG00000128739 meta-analisys
kable(sig.genes.df['ENSG00000128739',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000128739 | SNRPN | 0.7259763 | 1.028415 | 1.330854 | 0 | 0.9358445 | 0.3333488 | 0.1543085 | 0 | 0 | 1 | 0 | 4e-07 | 7.420997 | 2 | 2 | Study43 | 0.5105945 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000128739_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000128739_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000128739_INFLUENCE.png")
ENSG00000133169
Statistics of ENSG00000133169 meta-analisys
kable(sig.genes.df['ENSG00000133169',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000133169 | BEX1 | 0.2182771 | 0.3081742 | 0.3980713 | 0 | 0.0083448 | 0.9272145 | 0.0458667 | 0 | 0 | 1 | 0 | 3e-07 | 7.530841 | 2 | 2 | Study43 | 0.5032035 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000133169_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000133169_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000133169_INFLUENCE.png")
ENSG00000134532
Statistics of ENSG00000134532 meta-analisys
kable(sig.genes.df['ENSG00000134532',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000134532 | SOX5 | 1.139977 | 1.704366 | 2.268756 | 0 | 3.206361 | 0.2012554 | 0.287959 | 0.1000514 | 37.62399 | 1.603181 | 2.8e-06 | 2.79e-05 | 5.555522 | 3 | 3 | Study43,GSE163577 | 0.7291845 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000134532_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000134532_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000134532_INFLUENCE.png")
ENSG00000137266
Statistics of ENSG00000137266 meta-analisys
kable(sig.genes.df['ENSG00000137266',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000137266 | SLC22A23 | -1.130986 | -0.8577148 | -0.5844439 | 0 | 1.493128 | 0.4739925 | 0.1394265 | 0 | 0 | 1 | 8e-07 | 7.6e-06 | 6.119909 | 3 | 3 | Study43,GSE163577 | 0.9025186 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000137266_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000137266_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000137266_INFLUENCE.png")
ENSG00000139910
Statistics of ENSG00000139910 meta-analisys
kable(sig.genes.df['ENSG00000139910',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000139910 | NOVA1 | -1.685075 | -1.263625 | -0.8421751 | 0 | 0.3563423 | 0.8367992 | 0.2150294 | 0 | 0 | 1 | 3.4e-06 | 3.38e-05 | 5.472351 | 3 | 3 | non | 0.9024439 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000139910_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000139910_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000139910_INFLUENCE.png")
ENSG00000141668
Statistics of ENSG00000141668 meta-analisys
kable(sig.genes.df['ENSG00000141668',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000141668 | CBLN2 | 2.180633 | 2.610752 | 3.040872 | 0 | 0.0543941 | 0.8155864 | 0.2194529 | 0 | 0 | 1 | 0 | 0 | 28.10082 | 2 | 2 | Study43 | 0.5351578 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000141668_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000141668_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000141668_INFLUENCE.png")
ENSG00000164100
Statistics of ENSG00000164100 meta-analisys
kable(sig.genes.df['ENSG00000164100',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164100 | NDST3 | 2.02208 | 2.300414 | 2.578749 | 0 | 0.1577351 | 0.6912504 | 0.14201 | 0 | 0 | 1 | 0 | 0 | 54.18038 | 2 | 2 | Study43 | 0.5091864 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000164100_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000164100_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000164100_INFLUENCE.png")
ENSG00000164483
Statistics of ENSG00000164483 meta-analisys
kable(sig.genes.df['ENSG00000164483',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000164483 | SAMD3 | 1.299908 | 1.806773 | 2.313638 | 0 | 0.0170325 | 0.8961641 | 0.2586094 | 0 | 0 | 1 | 0 | 1e-07 | 8.285516 | 2 | 2 | non | 0.5579378 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000164483_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000164483_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000164483_INFLUENCE.png")
ENSG00000168830
Statistics of ENSG00000168830 meta-analisys
kable(sig.genes.df['ENSG00000168830',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000168830 | HTR1E | 1.075705 | 1.456456 | 1.837207 | 0 | 0.2381895 | 0.6255168 | 0.1942643 | 0 | 0 | 1 | 0 | 0 | 9.854667 | 2 | 2 | Study43 | 0.5191712 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000168830_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000168830_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000168830_INFLUENCE.png")
ENSG00000169282
Statistics of ENSG00000169282 meta-analisys
kable(sig.genes.df['ENSG00000169282',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000169282 | KCNAB1 | 1.063946 | 1.606918 | 2.149889 | 0 | 2.870497 | 0.2380562 | 0.2770312 | 0.0723124 | 30.32566 | 1.435249 | 4.7e-06 | 4.7e-05 | 5.329763 | 3 | 3 | Study43,GSE163577 | 0.952413 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000169282_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000169282_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000169282_INFLUENCE.png")
ENSG00000177511
Statistics of ENSG00000177511 meta-analisys
kable(sig.genes.df['ENSG00000177511',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000177511 | ST8SIA3 | 0.4482644 | 0.6436048 | 0.8389452 | 0 | 0.5344916 | 0.4647246 | 0.0996653 | 0 | 0 | 1 | 1e-07 | 1.4e-06 | 6.863751 | 2 | 1 | Study43 | 0.5056107 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000177511_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000177511_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000177511_INFLUENCE.png")
ENSG00000180440
Statistics of ENSG00000180440 meta-analisys
kable(sig.genes.df['ENSG00000180440',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000180440 | SERTM1 | 0.2628795 | 0.3924759 | 0.5220723 | 0 | 0.0017236 | 0.9668844 | 0.0661218 | 0 | 0 | 1 | 2.7e-06 | 2.7e-05 | 5.570143 | 2 | 2 | non | 0.502417 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000180440_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000180440_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000180440_INFLUENCE.png")
ENSG00000241684
Statistics of ENSG00000241684 meta-analisys
kable(sig.genes.df['ENSG00000241684',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000241684 | ADAMTS9-AS2 | -2.94898 | -2.453132 | -1.957283 | 0 | 0.1752489 | 0.6754885 | 0.2529884 | 0 | 0 | 1 | 0 | 0 | 17.87385 | 2 | 2 | GSE163577 | 0.6995361 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000241684_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000241684_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000241684_INFLUENCE.png")
ENSG00000251562
Statistics of ENSG00000251562 meta-analisys
kable(sig.genes.df['ENSG00000251562',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000251562 | MALAT1 | 0.7078191 | 0.8898782 | 1.071937 | 0 | 9.237856 | 0.0098634 | 0.092889 | 0.0190978 | 78.34996 | 4.618928 | 0 | 0 | 17.60248 | 3 | 3 | GSE163577 | 0.9963596 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000251562_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000251562_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000251562_INFLUENCE.png")
ENSG00000277586
Statistics of ENSG00000277586 meta-analisys
kable(sig.genes.df['ENSG00000277586',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000277586 | NEFL | 0.3252262 | 0.4734189 | 0.6216117 | 0 | 0.4588627 | 0.498156 | 0.0756099 | 0 | 0 | 1 | 4e-07 | 4.1e-06 | 6.387883 | 2 | 1 | Study43 | 0.5018249 | Study43 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000277586_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000277586_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Excitadoras/M/plots/ENSG00000277586_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 16:06:50 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2